wip: using custom-flakes implementation

nix/base-system/flake.lock

@@ -20,6 +20,22 @@
         "type": "github"
       }
     },
+    "avante-src": {
+      "flake": false,
+      "locked": {
+        "lastModified": 1746602870,
+        "narHash": "sha256-REBOplEe2muqfVLwcpTAmXpTrHlzSfhbh8T0litDTDA=",
+        "owner": "yetone",
+        "repo": "avante.nvim",
+        "rev": "113913355a6b9c0fbd62cf52d0cf3e5671d0e34a",
+        "type": "github"
+      },
+      "original": {
+        "owner": "yetone",
+        "repo": "avante.nvim",
+        "type": "github"
+      }
+    },
     "clio-flake": {
       "inputs": {
         "flake-compat": "flake-compat",
@@ -46,6 +62,7 @@
     },
     "custom-flakes": {
       "inputs": {
+        "avante-src": "avante-src",
         "d2-vim-src": "d2-vim-src",
         "flake-utils": "flake-utils_3",
         "gomod2nix-src": "gomod2nix-src",
@@ -67,11 +84,11 @@
         "zig-src": "zig-src"
       },
       "locked": {
-        "lastModified": 1746458473,
-        "narHash": "sha256-3FFhJ18MJFlHHI1YaMKRwXURcQjmLenxIcLFtr+CjGI=",
+        "lastModified": 1746633381,
+        "narHash": "sha256-9Vgnz0/Myw+XdZUxNWYhfdfRzz1SSDQIFjrhaXFcJpk=",
         "owner": "zaphar",
         "repo": "nix-flakes",
-        "rev": "91588e10769e706024d8d03ebb4958c89e00c264",
+        "rev": "30a4fb242f5e6542b842be1972d953d20945ed7a",
         "type": "github"
       },
       "original": {

nix/base-system/flake.nix

@@ -90,6 +90,7 @@
     vimModule = system: let
       nil-pkg = nil-flake.packages."${system}".default;
       mcp-hub-binary = custom-flakes.packages."${system}".mcp-hub;
+      notion-mcp-server = custom-flakes.packages."${system}".notion-mcp-server;
     in
     { config, pkgs, ...}: let
         unstablePkgs = import unstable { inherit system; };
@@ -139,7 +140,7 @@
             (final: prev: {
                 custom-neovim = nvim;
                 lorri = unstablePkgs.lorri;
-                avante-nvim = unstablePkgs.vimPlugins.avante-nvim;
+                our-avante-nvim = custom-flakes.packages."${system}".avante-nvim;
                 copilot-lua = unstablePkgs.vimPlugins.copilot-lua;
             })
         ];
@@ -155,7 +156,7 @@ EOF";
           packages.myVimPackage = {
             start = (with pkgs.vimPlugins; [
               copilot-lua
-              avante-nvim
+              our-avante-nvim
               vim-sile
               nvim-tree-lua
               nvim-lspconfig
@@ -251,6 +252,7 @@ EOF";
             devenv
             unstablePkgs.fq
             mcp-hub-binary
+            notion-mcp-server
         ]);
       };
     };

nix/base-system/init.lua

@@ -678,7 +678,7 @@ local mcphub = require("mcphub")
 mcphub.setup({
     -- This sets vim.g.mcphub_auto_approve to false by default (can also be toggled from the HUB UI with `ga`)
     config = vim.fn.expand("~/.config/mcphub/servers.json"),
-    auto_approve = false,
+    auto_approve = true,
     auto_toggle_mcp_servers = true, -- Let LLMs start and stop MCP servers automatically
     extensions = {
         avante = {
@@ -695,6 +695,7 @@ require('copilot').setup();
 require('avante').setup ({
     provider = "claude",
     mode = "agentic",
+    --debug = true,
     cursor_applying_provider = nil, -- default to whatever provide is configured
     claude = {
       endpoint = "https://api.anthropic.com",
@@ -703,12 +704,27 @@ require('avante').setup ({
       temperature = 0,
       max_tokens = 20480,
     },
+    rag_service = {
+      enabled = false,
+      host_mount = os.getenv("HOME"), -- Host mount path for the rag service
+      provider = "ollama", -- The provider to use for RAG service (e.g. openai or ollama)
+      llm_model = "llama3", -- The LLM model to use for RAG service
+      embed_model = "", -- The embedding model to use for RAG service
+      endpoint = "http://localhost:11434", -- The API endpoint for RAG service
+    },
     behavior = {
         enable_cursor_planning_mode = true,
     },
-    --system_prompt = hub_instance:get_active_servers_prompt(),
+    system_prompt = function()
+        local hub = require("mcphub").get_hub_instance()
+        return hub and hub:get_active_servers_prompt() or ""
+    end,
     -- Using function prevents requiring mcphub before it's loaded
-    custom_tools = require("mcphub.extensions.avante").mcp_tool(),
+    custom_tools = function()
+        return {
+            require("mcphub.extensions.avante").mcp_tool(),
+        }
+    end,
     -- Disable these because we'll use the mcphub versions instead
     disabled_tools = {
         "list_files",    -- Built-in file operations